PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0322s0062.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 906aa    MW: 98431.8 Da    PI: 5.9541
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0322s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19324423198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++  
  Kalax.0322s0062.1.p 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 410
                          99**************************556667788***************9989999999***9.********************4.. PP

                          S.SEE..EEEEE- CS
                   B3  87 r.sefelvvkvfr 98 
                          r  +++lv++ ++
  Kalax.0322s0062.1.p 411 RdPGGKLVIGSRK 423
                          4499999998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-29319425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20321422IPR015300DNA-binding pseudobarrel domain
CDDcd100175.54E-23322419No hitNo description
PfamPF023622.9E-16324423IPR003340B3 DNA binding domain
SMARTSM010192.3E-20324424IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462324425IPR003340B3 DNA binding domain
PROSITE profilePS5105012.983580630IPR011124Zinc finger, CW-type
PfamPF074961.5E-8585627IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MGTAICMNKS CRTPSSPEWK SGWPLRSGGF ATLCLVCGSA FENLVYCETF HRDESGWREC  60
DSCKKPIHCG CASSKPFIEL LDLGGACCIT CAKTTGQPIW RDEVSNGHST QVLSSVGGLQ  120
PTLGEVRIKG DIAGKGKNLL LGKTKMGGDP DCLPQIPKGE ANLSLGAVNG EDVMQSFGDL  180
SSNFLNLNSQ SVGSSHPNVS LGIQDSYEAI PQTSLNIGLS ASSDPSNFSA KNSCGVVDGI  240
ELIKLPSPLQ QSQRSRVILP KLSKGGLSLS IDASKAVVQQ PRVARPPAEG RGRNQLLPRY  300
WPRITDQELQ QLSGDLNSPV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGTP  360
IRIQDAKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVIFSR RDPGGKLVIG  420
SRKASVSSDT PDGDIAALAN GAHGESSFSG VSAASGYSGT LQSAAENRDP RMLALSEQMT  480
LAHCNLGWSK SERYRGRIIG TPLQPSMVNR PKNISLKSRR LLMHNEDVLE LKLTWDEAQD  540
LLRAPPSIKP SIVTVEDHEI EEFDEPPVLA KKTIFTVGPS GGQEQWAQCD LCSKWRRLPV  600
DVLLPLKWNC AENFWDSDRC LCSAPDEVGA KELENLLKSG KDLKRRRILE NHKMAPDHEP  660
SGLDALASAA VLGDNAGESG DTSVGATTKH PRHRPGCTCI VCIQPPSGKG KHNPTCTCNV  720
CMTVKRRFKT LMLRKRIRQS EREAEIAQRD PVQPKENYVL TNVKGDYGHE TLQSLPVQTE  780
AEADRTGQNL VHVDQVSDNS DGQLDLNCHP DRSNECMEQE MSAAVSMTRL VHDAAHPLES  840
YLKQNGHANL TSDATVPPQT IEESEDGDAD EDDRVVESES MAGPENKDDD RSGQANQDQD  900
ANQKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1432341013102DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1643647KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017086.10.0High-level expression of sugar-inducible gene 2, putative isoform 1
RefseqXP_007017087.10.0High-level expression of sugar-inducible gene 2, putative isoform 1
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2